Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014017.1_1385_1916_F

Intron Information:

Intron Rank:

128322

Intron Class:

major

Intron Phase:

Intron Coordinates:

1385 - 1916

Intron Length:

532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

AATCATTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

1.1

85.2

32.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

91.6

0.94

0.7

84.6

Minor 5ss

44.2

-0.6

3.3

66.9

44.4

Minor BPS

58.5

0.25

1.4

64.63

34.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019111

Chromosome:

PEDO01014017.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046565

21 - 2916

2896