Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014023.1_397_483_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

397 - 483

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGTGGG

5'SS Class:

major

3'SS Sequence:

CCGGTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAT

U12 Branch Point Sequence:

CGCCGCTCATCC

Flanking Amino Acid:

APPEGPPGRQGGEHGPGDGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

59.7

45.2

Major BPS

67.4

0.43

1.2

38.9

Major PPT

61.4

0.26

0.9

53.6

36.7

Minor 5ss

37.7

-1.4

3.1

40.1

Minor BPS

-0.7

2.1

44.5

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025230

Chromosome:

PEDO01014023.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023384

144 - 1839

1696