Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014041.1_392_468_R

Intron Information:

Intron Rank:

141275

Intron Class:

major

Intron Phase:

Intron Coordinates:

392 - 468

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

TCCCGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTCAC

U12 Branch Point Sequence:

ACGTCCCCACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

57.5

0.19

1.1

60.7

37.6

Major PPT

80.4

0.68

0.8

71.8

38.1

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

45.3

-0.2

2.1

63.22

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023359

Chromosome:

PEDO01014041.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039932

273 - 2985

2713

ENSAPLT00000025577

273 - 2985

2713