Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014045.1_532_643_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

532 - 643

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CGGTGCTCACCT

Flanking Amino Acid:

AGPSTHPQPKEGTLWGVLAI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

67.6

39.4

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

75.1

0.57

68.5

42.1

Minor 5ss

32.7

-2

39.6

45.9

Minor BPS

44.3

-0.3

2.2

60.43

48.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019730

Chromosome:

PEDO01014045.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030052

21 - 2308

2288