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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014048.1_1685_1751_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1685 - 1751
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACCCCACTGACA
Flanking Amino Acid:
PSRRDVWKATRVGTSVFTRV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
74.4
0.55
0.7
68
25.7
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
44.5
-0.4
1.9
52.33
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012382
Chromosome:
PEDO01014048.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012883
750 - 1785
1036