Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014088.1_364_716_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

364 - 716

Intron Length:

353

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCACGAATC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCATAT

U12 Branch Point Sequence:

ATATTTTCGAGA

Flanking Amino Acid:

FSAEECAKIERLGALLRLQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

Major BPS

61.6

0.29

1.1

57.2

40.1

Major PPT

89.4

0.89

0.6

87.7

22.3

Minor 5ss

26.6

-2.7

4.1

42.9

44.3

Minor BPS

46.2

-0.3

1.8

56.48

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018290

Chromosome:

PEDO01014088.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021538

21 - 3166

3146