About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014091.1_1307_1397_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1307 - 1397
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTTTT
5'SS Class:
major
3'SS Sequence:
GTTTCTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGTTTCTATT
Flanking Amino Acid:
IVVLVGIGVTGGLFYVIFKE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
81.9
32
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.7
0.76
0.8
77.9
35.1
Minor 5ss
42.6
-0.8
2.8
59.6
44.7
Minor BPS
47.6
-0.1
1.9
70.82
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018938
Chromosome:
PEDO01014091.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032956
6 - 4336
4331