Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014109.1_172_1001_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

172 - 1001

Intron Length:

830

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AGG|GCAGGGCTA

5'SS Class:

major

3'SS Sequence:

AGCTATGGGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATCTAT

U12 Branch Point Sequence:

TGGGTCTGAGCT

Flanking Amino Acid:

YGFGYGSSYRAPDPIYGSGY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.2

64.4

39.7

Major BPS

53.7

0.09

1.3

54.1

41.5

Major PPT

51.4

0.03

1.2

46.2

Minor 5ss

22.2

-3.2

4.2

43.6

Minor BPS

-0

1.8

65.09

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025136

Chromosome:

PEDO01014109.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026182

106 - 1226

1121