About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014111.1_632_953_R

Intron Information:

Intron Rank:
140187
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
632 - 953
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCACCTAG
5'SS Class:
weak_major
3'SS Sequence:
GAGGCCACCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGACAT
U12 Branch Point Sequence:
CCACCTTGGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.5
47.6
45.5
Major BPS
46.8
-0.2
1.3
52.7
43.2
Major PPT
53.3
0.08
1
43.5
37.2
Minor 5ss
43.7
-0.7
2.7
47.6
47.9
Minor BPS
42.8
-0.5
1.7
44.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022803
Chromosome:
PEDO01014111.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025499
532 - 1440
909