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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014118.1_1356_1466_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1356 - 1466
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CCGTCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAT
U12 Branch Point Sequence:
GCAGCCCCATCT
Flanking Amino Acid:
ISRNRINNLQLDAESEVNNE
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
46.8
-0.2
1.4
54.3
42.9
Major PPT
72.9
0.51
0.8
65.7
30.3
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
40.9
-0.6
2.1
54.67
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028316
Chromosome:
PEDO01014118.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043735
702 - 4512
3811
ENSAPLT00000037441
240 - 4512
4273
ENSAPLT00000035952
21 - 3260
3240
ENSAPLT00000048202
240 - 3260
3021