Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014122.1_55_150_R

Intron Information:

Intron Rank:

150942

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

55 - 150

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTATGCCTG

5'SS Class:

weak_major

3'SS Sequence:

CCTTGCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTGAG

U12 Branch Point Sequence:

GGAGCCTGAGCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.5

0.08

1.4

47.1

48.4

Major BPS

44.9

-0.3

1.6

42.9

Major PPT

81.5

0.71

0.8

72.4

37.7

Minor 5ss

48.5

-0.1

2.7

60.2

44.7

Minor BPS

48.3

-0

1.8

63.9

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028693

Chromosome:

PEDO01014122.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048295

21 - 1080

1060