About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014130.1_1504_1654_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1504 - 1654
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TGCCGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAG
U12 Branch Point Sequence:
CGCTCCCTAGGG
Flanking Amino Acid:
GDIAELKPGQGTLTLLTNER
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
43
-0.4
1.6
40.4
41.7
Major PPT
72.8
0.51
0.9
65.5
36.1
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
41.9
-0.7
2.2
44.43
47.2

Associated Gene:

Gene:
AMT
Ensembl Gene ID:
ENSAPLG00000023879
Chromosome:
PEDO01014130.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024233
21 - 4026
4006