Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014130.1_245_326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

245 - 326

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTACGTGGG

5'SS Class:

major

3'SS Sequence:

ATGGTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

CCCCGCTCACCT

Flanking Amino Acid:

VILDPEGRPVGTVTSGCPSP

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

58.2

46.8

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

64.7

0.33

54.6

45.2

Minor 5ss

30.6

-2.2

3.3

31.6

42.7

Minor BPS

-0.6

2.1

52.75

48.1

Associated Gene:

Gene:

AMT

Ensembl Gene ID:

ENSAPLG00000023879

Chromosome:

PEDO01014130.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024233

21 - 4026

4006

ENSAPLT00000027527

21 - 4026

4006

ENSAPLT00000026932

21 - 2374

2354