Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014130.1_2565_3870_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2565 - 3870

Intron Length:

1306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACAGCAT

U12 Branch Point Sequence:

TGCCCCACAGCA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.2

39.5

Major BPS

46.8

-0.2

1.4

53.7

41.6

Major PPT

78.1

0.63

0.8

31.9

Minor 5ss

28.5

-2.5

3.1

31.8

42.6

Minor BPS

43.7

-0.4

55.45

42.7

Associated Gene:

Gene:

AMT

Ensembl Gene ID:

ENSAPLG00000023879

Chromosome:

PEDO01014130.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027527

21 - 4026

4006

ENSAPLT00000024233

21 - 4026

4006