Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014138.1_850_4549_R

Intron Information:

Intron Rank:

149704

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

850 - 4549

Intron Length:

3700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTTACAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTAGTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.6

12.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

58.6

0.2

1.1

59.1

40.2

Minor 5ss

36.2

-1.6

2.9

50.6

45.9

Minor BPS

68.5

0.66

1.3

79.64

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028079

Chromosome:

PEDO01014138.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036867

21 - 4880

4860