Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014152.1_5058_5164_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5058 - 5164

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAATGCAG

5'SS Class:

major

3'SS Sequence:

TATTCTATTATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ATGTCTTCATCT

Flanking Amino Acid:

YQPIPQPTTPVSSFTSGSML

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

53.7

44.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

79.5

0.66

0.8

74.1

Minor 5ss

30.7

-2.2

3.3

39.4

Minor BPS

55.6

0.25

1.8

74.42

42.6

Associated Gene:

Gene:

PAX6

Ensembl Gene ID:

ENSAPLG00000004928

Chromosome:

PEDO01014152.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005123

1458 - 12234

10777

ENSAPLT00000038059

1458 - 12234

10777