Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014160.1_1431_2397_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1431 - 2397

Intron Length:

967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGAAGC

5'SS Class:

major

3'SS Sequence:

CACCCGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CCCCTCTGAGCA

Flanking Amino Acid:

KVIQNLANFTKFGSKEEYMA

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

68.7

36.3

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

66.1

0.36

0.9

57.7

32.9

Minor 5ss

30.1

-2.3

2.9

35.2

34.6

Minor BPS

45.1

-0.3

1.7

48.77

42.1

Associated Gene:

Gene:

SYNGAP1

Ensembl Gene ID:

ENSAPLG00000019423

Chromosome:

PEDO01014160.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030881

21 - 5756

5736