Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014160.1_3185_4120_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3185 - 4120

Intron Length:

936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGACC

5'SS Class:

major

3'SS Sequence:

GCCCCCTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAA

U12 Branch Point Sequence:

CCCCTCCCAACC

Flanking Amino Acid:

LQPYLVRDLNSSMEVPRLPS

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

35.3

Major BPS

50.7

0.02

1.2

62.1

35.8

Major PPT

66.8

0.38

0.8

57.1

33.4

Minor 5ss

26.7

-2.7

3.2

34.1

41.8

Minor BPS

43.5

-0.5

1.8

47.95

41.8

Associated Gene:

Gene:

SYNGAP1

Ensembl Gene ID:

ENSAPLG00000019423

Chromosome:

PEDO01014160.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030881

21 - 5756

5736