Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014165.1_1518_1633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1518 - 1633

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CCTGTTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCAAT

U12 Branch Point Sequence:

GGTGCCGTGACC

Flanking Amino Acid:

RGGGAGAVCSGLLRLAGGSS

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.3

39.5

Major BPS

59.3

0.23

1.3

66.9

37.7

Major PPT

78.1

0.63

0.9

Minor 5ss

30.6

-2.2

3.4

39.1

46.7

Minor BPS

49.3

-0

2.2

63.24

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025404

Chromosome:

PEDO01014165.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039196

21 - 2879

2859