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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014173.1_1251_1338_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1251 - 1338
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
CGGCCTGGACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACGGCCTGGACC
Flanking Amino Acid:
TAGVPAATAPIQDELRPRLQ
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.1
51.9
39.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
51
0.02
1.1
42.7
42.1
Minor 5ss
30.6
-2.2
3.7
43.6
44.9
Minor BPS
49.8
-0
1.6
56.3
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024929
Chromosome:
PEDO01014173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029001
21 - 2590
2570