Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014176.1_1693_2678_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1693 - 2678

Intron Length:

986

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGGGCA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

CACGCTTTATCC

Flanking Amino Acid:

ESSSWDQMIIDAGQKHFGAV

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.35

1.3

59.4

39.7

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

88.1

0.86

0.6

81.6

30.5

Minor 5ss

-2.2

3.5

39.4

40.7

Minor BPS

-0

1.7

54.45

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003583

Chromosome:

PEDO01014176.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003650

21 - 7935

7915