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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014219.1_1720_2251_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1720 - 2251
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CCCCTGGGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AGCTGCTGACCC
Flanking Amino Acid:
RWFAVTTTTTNIISPLENAI
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
58
0.18
1
51.7
36.8
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
44.7
-0.4
2.1
54.19
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019309
Chromosome:
PEDO01014219.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038402
1079 - 4487
3409