Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014256.1_154_925_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

154 - 925

Intron Length:

772

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AGG|GCCCGGGGC

5'SS Class:

major

3'SS Sequence:

TTGCGGAGGGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGGTGAC

U12 Branch Point Sequence:

TCTGCCACACCG

Flanking Amino Acid:

DLLDFSMVSEELVFKKKITL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.8

0.3

1.3

59.3

39.3

Major BPS

48.9

-0

1.3

40.5

41.4

Major PPT

42.2

-0.4

1.7

39.2

43.6

Minor 5ss

13.1

-4.3

3.7

14.9

28.8

Minor BPS

43.1

-0.6

2.2

52.18

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016797

Chromosome:

PEDO01014256.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022239

59 - 1010

952