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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014266.1_868_1095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
868 - 1095
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TCCTCATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATTCACA
Flanking Amino Acid:
GEKTINLTVDIPISKPQVLV
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
60.8
38.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.7
0.62
0.8
71.8
31.6
Minor 5ss
31.7
-2.1
3.6
44.4
44.2
Minor BPS
54.7
0.14
2.1
68.02
44.4

Associated Gene:

Gene:
HEPACAM
Ensembl Gene ID:
ENSAPLG00000012519
Chromosome:
PEDO01014266.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013029
12 - 2811
2800