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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014316.1_1986_2064_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1986 - 2064
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGGGTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
TTTTGCTGCAGC
Flanking Amino Acid:
YETSVLDPDEGIRFRGYSIP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.9
38
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
77.1
0.61
1
73.5
41.8
Minor 5ss
39.9
-1.1
3.6
57.8
47.2
Minor BPS
45.2
-0.3
2.5
66.78
44.8

Associated Gene:

Gene:
CS
Ensembl Gene ID:
ENSAPLG00000030885
Chromosome:
PEDO01014316.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023997
21 - 2763
2743