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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014316.1_339_420_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
339 - 420
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CGGGCCCTAACG
Flanking Amino Acid:
VDAHSGVLLQYYGMKEMKYY
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
48.8
-0.2
1.9
52.54
47.7

Associated Gene:

Gene:
CS
Ensembl Gene ID:
ENSAPLG00000030885
Chromosome:
PEDO01014316.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023997
21 - 2763
2743