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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014316.1_631_702_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
631 - 702
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGCTCTGACCC
Flanking Amino Acid:
FIWNTLNSGRVVPGYGHAVL
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.4
0.64
0.7
72
26.1
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
45.2
-0.3
1.7
50.02
40

Associated Gene:

Gene:
CS
Ensembl Gene ID:
ENSAPLG00000030885
Chromosome:
PEDO01014316.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023997
21 - 2763
2743