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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014334.1_2071_2943_F

Intron Information:

Intron Rank:
147977
Intron Class:
major
Intron Phase:
Intron Coordinates:
2071 - 2943
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAGCTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.5
0.8
0.8
80.7
31.4
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
69.5
0.69
1.2
78.03
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029669
Chromosome:
PEDO01014334.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039204
1483 - 4046
2564