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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014336.1_635_2878_R

Intron Information:

Intron Rank:
147344
Intron Class:
major
Intron Phase:
Intron Coordinates:
635 - 2878
Intron Length:
2244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTAACCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGATCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.7
0.51
0.9
65.7
35.5
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
48.8
-0.1
1.9
63.54
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026612
Chromosome:
PEDO01014336.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041211
21 - 3559
3539