Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014340.1_1257_1835_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1257 - 1835

Intron Length:

579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGCGTAGC

5'SS Class:

major

3'SS Sequence:

ACCCCCAAAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TTCTCCCCATTT

Flanking Amino Acid:

GLSIAQLIDVDEKNQMMTTN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

65.1

40.8

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

54.4

0.1

32.3

Minor 5ss

29.7

-2.3

2.8

33.6

36.4

Minor BPS

48.2

-0

2.1

72.84

44.3

Associated Gene:

Gene:

CHRNA2

Ensembl Gene ID:

ENSAPLG00000020368

Chromosome:

PEDO01014340.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035485

21 - 4148

4128