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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014340.1_1881_2062_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1881 - 2062
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GCCTCCTGATGC
Flanking Amino Acid:
MMTTNVWLKQEWSDYKLRWN
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.5
0.57
0.8
66
35.9
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
45.2
-0.3
2
51.51
45.4

Associated Gene:

Gene:
CHRNA2
Ensembl Gene ID:
ENSAPLG00000020368
Chromosome:
PEDO01014340.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035485
21 - 4148
4128