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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014340.1_457_1104_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
457 - 1104
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
CTCCTTGCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCTTTTTTACCC
Flanking Amino Acid:
LAWCFITFQEAPAQKQPRSH
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.7
0.44
0.9
65.7
34.7
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
57.8
0.22
1.6
64.58
42.1

Associated Gene:

Gene:
CHRNA2
Ensembl Gene ID:
ENSAPLG00000020368
Chromosome:
PEDO01014340.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035485
21 - 4148
4128