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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014371.1_1525_2440_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1525 - 2440
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTACCTCTT
5'SS Class:
weak_major
3'SS Sequence:
TCTATTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAGCTTTTAACA
Flanking Amino Acid:
WQDVTSTAAYITETNLCC*
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.3
65.8
45.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.5
0.51
1
69.8
40.2
Minor 5ss
47.1
-0.3
3.2
71.6
38.6
Minor BPS
66.9
0.53
1.2
69.39
36.8

Associated Gene:

Gene:
TPD52
Ensembl Gene ID:
ENSAPLG00000029036
Chromosome:
PEDO01014371.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048121
1498 - 5458
3961