Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014400.1_1866_2009_F

Intron Information:

Intron Rank:

128483

Intron Class:

major

Intron Phase:

Intron Coordinates:

1866 - 2009

Intron Length:

144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGAGC

5'SS Class:

major

3'SS Sequence:

TTTCGTTCGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

AATTTCTGAGGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

67.8

43.5

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

75.4

0.57

69.5

41.6

Minor 5ss

32.2

-2

3.1

34.8

41.4

Minor BPS

45.3

-0.4

51.61

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019204

Chromosome:

PEDO01014400.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042211

168 - 2924

2757

ENSAPLT00000033514

168 - 2924

2757