Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014400.1_2148_2326_F

Intron Information:

Intron Rank:

128484

Intron Class:

major

Intron Phase:

Intron Coordinates:

2148 - 2326

Intron Length:

179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GCTCTCTGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

CCCACCTGACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.8

72.1

31.2

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

74.3

0.55

68.7

37.2

Minor 5ss

26.3

-2.7

3.1

33.4

Minor BPS

46.7

-0.2

1.8

52.34

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019204

Chromosome:

PEDO01014400.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042211

168 - 2924

2757

ENSAPLT00000033514

168 - 2924

2757