Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014400.1_765_923_F

Intron Information:

Intron Rank:

128486

Intron Class:

major

Intron Phase:

Intron Coordinates:

765 - 923

Intron Length:

159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGGAG

5'SS Class:

major

3'SS Sequence:

CCTTTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAGGAT

U12 Branch Point Sequence:

ATACGCTGAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

64.1

42.1

Major BPS

47.3

-0.1

1.3

43.5

39.2

Major PPT

0.81

0.7

80.5

24.8

Minor 5ss

27.5

-2.6

3.6

36.9

47.7

Minor BPS

46.3

-0.2

2.1

65.93

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019204

Chromosome:

PEDO01014400.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042211

168 - 2924

2757

ENSAPLT00000033514

168 - 2924

2757