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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014405.1_392_1286_R

Intron Information:

Intron Rank:
144267
Intron Class:
major
Intron Phase:
Intron Coordinates:
392 - 1286
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACGAT
U12 Branch Point Sequence:
CTGTCCCCACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
48.7
-0
1.4
46.5
46.6
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.1
-0.8
2.1
45.45
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024883
Chromosome:
PEDO01014405.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032560
21 - 2175
2155