Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014416.1_243_358_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

243 - 358

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGGGG

5'SS Class:

major

3'SS Sequence:

CGTGTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GCCGCCCTCACG

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

54.8

44.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

71.9

0.49

0.9

65.4

36.1

Minor 5ss

21.8

-3.3

3.4

28.2

Minor BPS

42.7

-0.7

2.2

44.1

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009816

Chromosome:

PEDO01014416.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010213

21 - 1754

1734