Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014476.1_4362_4593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4362 - 4593

Intron Length:

232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCGGG

5'SS Class:

major

3'SS Sequence:

GCCCCGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAG

U12 Branch Point Sequence:

CACCCCTCAGCC

Flanking Amino Acid:

LEQLKLEDQKDLERRQEQQK

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.3

47.1

Major BPS

48.4

-0.1

1.5

56.9

40.5

Major PPT

68.9

0.43

0.9

60.6

35.2

Minor 5ss

31.2

-2.2

3.2

38.7

46.4

Minor BPS

47.1

-0.2

1.8

53.47

43.8

Associated Gene:

Gene:

CFAP45

Ensembl Gene ID:

ENSAPLG00000023477

Chromosome:

PEDO01014476.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017704

21 - 7093

7073