Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014493.1_11001_11352_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11001 - 11352

Intron Length:

352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

TTCTTTATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTTCTTTATTT

Flanking Amino Acid:

TKAEPTYEVAFHSTADVTRL

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

77.9

31.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

90.2

0.9

0.7

89.1

26.1

Minor 5ss

36.4

-1.5

2.9

48.3

41.8

Minor BPS

70.4

0.72

1.5

84.38

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028561

Chromosome:

PEDO01014493.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019185

4853 - 13844

8992