Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014529.1_2325_3134_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2325 - 3134

Intron Length:

810

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCAGCAT

U12 Branch Point Sequence:

CTTTCTTTTCCT

Flanking Amino Acid:

IAEQLGEGDEVISKFDYVFA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

35.2

Major BPS

43.3

-0.4

1.5

47.7

45.7

Major PPT

83.4

0.75

0.7

80.6

24.7

Minor 5ss

28.4

-2.5

2.8

34.6

41.3

Minor BPS

45.4

-0.2

3.6

79.44

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004822

Chromosome:

PEDO01014529.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004978

1217 - 6744

5528