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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014532.1_3531_3959_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3531 - 3959
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CAGCGCTGACCC
Flanking Amino Acid:
FPLTFEAIKQEYQGTLERDG
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
72.9
0.52
0.9
65.3
36.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
40.9
-0.7
2
45.59
42.7

Associated Gene:

Gene:
GLB1L
Ensembl Gene ID:
ENSAPLG00000010268
Chromosome:
PEDO01014532.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029045
21 - 4884
4864