About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014532.1_590_1194_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
590 - 1194

Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTCGGTGCA

5'SS Class:
major

3'SS Sequence:
CCTCTCCCCGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCCCAG

U12 Branch Point Sequence:
GGTTGCCCAGCC

Flanking Amino Acid:
LLAAGLLRAQPTAPARSFQL

Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.7
0.49
1.3
66
40.2

Major BPS
43.3
-0.4
1.6
52.1
45.2

Major PPT
75
0.56
0.7
69
24.7

Minor 5ss
27
-2.6
3.1
33
42

Minor BPS
40.1
-0.7
2.3
53.44
43.5

Associated Gene:

Gene:
GLB1L

Ensembl Gene ID:

Chromosome:
PEDO01014532.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 4884
4864

21 - 4884
4864

21 - 4884
4864