Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014535.1_2295_2398_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2295 - 2398

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCGCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

TGCTCAGCAGCT

Flanking Amino Acid:

NKTILPKVMQVKNFGRSGRT

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.2

39.5

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

67.2

0.39

0.8

57.3

33.4

Minor 5ss

29.5

-2.4

3.4

39.1

46.7

Minor BPS

40.4

-0.6

2.4

62.31

Associated Gene:

Gene:

MFAP1

Ensembl Gene ID:

ENSAPLG00000006483

Chromosome:

PEDO01014535.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026096

972 - 5304

4333

ENSAPLT00000006727

2111 - 5304

3194