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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014535.1_626_802_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
626 - 802
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
GCTGTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
GCCCGCTGCAGC
Flanking Amino Acid:
TIKKEDLELIMTEMEISRAA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.3
59.8
45.2
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
76.5
0.6
0.9
69.6
36.8
Minor 5ss
33.6
-1.9
3.2
40.8
40
Minor BPS
34.6
-1.2
2.2
36.68
40.6

Associated Gene:

Gene:
HYPK
Ensembl Gene ID:
ENSAPLG00000022885
Chromosome:
PEDO01014535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044442
21 - 898
878