Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014541.1_5254_5344_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5254 - 5344

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TCCGCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCACCAT

U12 Branch Point Sequence:

GTGTCACCATCC

Flanking Amino Acid:

LLPGQRSWQAGALKAASAHA

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

0.08

1.4

42.7

Major PPT

73.4

0.53

0.8

64.6

36.5

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

40.6

-0.7

2.2

53.8

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029853

Chromosome:

PEDO01014541.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020660

3948 - 6859

2912

ENSAPLT00000042467

3948 - 6859

2912