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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014558.1_11092_12320_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11092 - 12320
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
TTTATCCGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTGCCCTTTATC
Flanking Amino Acid:
LEVLKGQLDQTADDARDFFK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
75.5
0.57
0.9
73.7
36.7
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
63.7
0.41
1.6
72.1
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028404
Chromosome:
PEDO01014558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045877
11020 - 12589
1570