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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014558.1_12427_12509_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12427 - 12509
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
GCCCCCTCACCG
Flanking Amino Acid:
ALQEKHAMKQAVVEMMNQKI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.4
37
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
80.7
0.69
0.7
73.2
31.8
Minor 5ss
30
-2.3
3.5
34
41.8
Minor BPS
45.1
-0.5
1.9
45.65
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028404
Chromosome:
PEDO01014558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045877
11020 - 12589
1570