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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014558.1_2898_3087_F

Intron Information:

Intron Rank:
86803
Intron Class:
major
Intron Phase:
Intron Coordinates:
2898 - 3087
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
CTCTCTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.5
40.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.4
0.57
0.9
71.7
32.9
Minor 5ss
31.4
-2.1
3.2
35.7
42.1
Minor BPS
69.3
0.59
1.3
74.15
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012267
Chromosome:
PEDO01014558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012836
232 - 10412
10181