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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014558.1_8199_8281_F

Intron Information:

Intron Rank:
86819
Intron Class:
major
Intron Phase:
Intron Coordinates:
8199 - 8281
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTCTCCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
76.8
0.6
1
73.2
41.9
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
54.1
-0
1.9
59.75
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012267
Chromosome:
PEDO01014558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012836
232 - 10412
10181